1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.0000864:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GDK19_RS03445
Histidine kinase, Classic
Clostridioides difficile · GCF_900744565
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900744565#GDK19_RS03445Stable P2CS identifier used across views.
GenomeGCF_900744565Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 305 aa (72.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.00000012:150:66:643 HATPase_c#3
202-304 aa · 103 aa · 33.8% of protein
Raw token
HATPase_c:202:1.05e-30:304:103:109- Raw architecture: HAMP:4:0.0000864:56:53:69#HisKA:85:0.00000012:150:66:64#HATPase_c:202:1.05e-30:304:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900744565::NZ_CAADRJ010000003.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78779-80394Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900744565::NZ_CAADRJ010000003.1::G00013Context members
GDK19_RS03445GDK19_RS03450
Partner locus tags
GDK19_RS03445GDK19_RS03450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012816190.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ1E3Z7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ1E3Z7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGDK19_RS03445Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAADRJ010000003.1Sequence record reported by the local genomic context database.
Genomic interval78 779-79 696 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 779-80 394 ntGCF_900744565::NZ_CAADRJ010000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900744565::NZ_CAADRJ010000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAADRJ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span78 779-80 394 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 779 nt80 394 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GDK19_RS03445GCF_900744565#GDK19_RS03445
HKClassicCurrent focus
78 779-79 696 nt · Reverse (-)
GDK19_RS03450GCF_900744565#GDK19_RS03450
RROmpR
79 702-80 394 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000027105#CDR20291_RS09540Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2881994
Simplified PFAM architecture for HKOC_2881994
PFAM domain coverage: 170 / 305 aa (55.7%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[199-304]
- Domain count: 2
- Matched identifier: HKOC_2881994
- Positioned domains: HisKA 85-148 ; HATPase_c 199-304
Cluster members and taxonomy
Representative gene: GCF_000027105#CDR20291_RS09540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900744565
AssemblyPUC577 · Contighaploid
Genome composition4 124 972 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key