1 Response_reg#1
5-109 aa · 105 aa · 55.6% of protein
Raw token
Response_reg:5:4.04e-29:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1245_RS15080
Response regulator, unclassified
Clostridioides difficile · GCF_900692275
ClassRRTypeunclassifiedLength189 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900692275#E1245_RS15080Stable P2CS identifier used across views.
GenomeGCF_900692275Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length189 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage105 / 189 aa (55.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa189 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:4.04e-29:109:106:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900692275::NZ_CAADEJ010000020.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13102-15234Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1710368_03057RefSeq proteinWP_330555942.1
Context group ID
GCF_900692275::NZ_CAADEJ010000020.1::G00049Context members
E1245_RS15080E1245_RS15085
Partner locus tags
E1245_RS15080E1245_RS15085
Partner old locus tags
SAMEA1710368_03057SAMEA1710368_03059
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330555942.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1245_RS15080Primary locus identifier stored in the genes table.
Old locus tagSAMEA1710368_03057Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAADEJ010000020.1Sequence record reported by the local genomic context database.
Genomic interval13 102-13 671 nt570 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 102-15 234 ntGCF_900692275::NZ_CAADEJ010000020.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900692275::NZ_CAADEJ010000020.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAADEJ010000020.1All displayed genes belong to this local TCS context.
Neighborhood span13 102-15 234 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 102 nt15 234 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E1245_RS15080GCF_900692275#E1245_RS15080
RRunclassifiedCurrent focus
13 102-13 671 nt · Forward (+)
E1245_RS15085GCF_900692275#E1245_RS15085
HKClassic
13 831-15 234 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0208275Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862784
Simplified PFAM architecture for RROC_0862784
PFAM domain coverage: 184 / 241 aa (76.3%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[160-236]
- Domain count: 2
- Matched identifier: RROC_0862784
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 160-236 ; Trans_reg_C 160-236
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0208275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900692275
Assembly9221_6#35 · Contighaploid
Genome composition3 969 496 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key