1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:1.97e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1252_RS15215
Response regulator OmpR family
Clostridioides difficile · GCF_900691975
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900691975#E1252_RS15215Stable P2CS identifier used across views.
GenomeGCF_900691975Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:148:4.28e-27:221:75:77- Raw architecture: Response_reg:4:1.97e-25:113:111:111#Trans_reg_C:148:4.28e-27:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900691975::NZ_CAADDR010000011.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102542-104244Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1710759_03039RefSeq proteinWP_003436727.1
Context group ID
GCF_900691975::NZ_CAADDR010000011.1::G00051Context members
E1252_RS15215E1252_RS15220
Partner locus tags
E1252_RS15215E1252_RS15220
Partner old locus tags
SAMEA1710759_03039SAMEA1710759_03040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003436727.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N1Y6Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N1Y6_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1252_RS15215Primary locus identifier stored in the genes table.
Old locus tagSAMEA1710759_03039Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAADDR010000011.1Sequence record reported by the local genomic context database.
Genomic interval102 542-103 216 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span102 542-104 244 ntGCF_900691975::NZ_CAADDR010000011.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900691975::NZ_CAADDR010000011.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAADDR010000011.1All displayed genes belong to this local TCS context.
Neighborhood span102 542-104 244 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 542 nt104 244 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E1252_RS15215GCF_900691975#E1252_RS15215
RROmpRCurrent focus
102 542-103 216 nt · Forward (+)
E1252_RS15220GCF_900691975#E1252_RS15220
HKClassic
103 240-104 244 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0207550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1528471
Simplified PFAM architecture for RROC_1528471
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1528471
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0207550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900691975
Assembly9221_1#35 · Contighaploid
Genome composition4 031 609 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key