1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.55e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1159_RS08920
Response regulator OmpR family
Clostridioides difficile · GCF_900689605
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_900689605#E1159_RS08920Stable P2CS identifier used across views.
GenomeGCF_900689605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.44e-22:223:75:77- Raw architecture: Response_reg:5:1.55e-23:114:111:111#Trans_reg_C:150:2.44e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_900689605::NZ_CAADBW010000006.1::G00025
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span157463-160957Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1710801_01786RefSeq proteinWP_133147393.1
Context group ID
GCF_900689605::NZ_CAADBW010000006.1::G00025Context members
E1159_RS08910E1159_RS08915E1159_RS08920
Partner locus tags
E1159_RS08910E1159_RS08915E1159_RS08920
Partner old locus tags
SAMEA1710801_01784SAMEA1710801_01785SAMEA1710801_01786
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_133147393.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1159_RS08920Primary locus identifier stored in the genes table.
Old locus tagSAMEA1710801_01786Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAADBW010000006.1Sequence record reported by the local genomic context database.
Genomic interval160 277-160 957 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span157 463-160 957 ntGCF_900689605::NZ_CAADBW010000006.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900689605::NZ_CAADBW010000006.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAADBW010000006.1All displayed genes belong to this local TCS context.
Neighborhood span157 463-160 957 nt3 495 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 463 nt160 957 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
E1159_RS08910GCF_900689605#E1159_RS08910
RROmpR
157 463-158 140 nt · Forward (+)
E1159_RS08915GCF_900689605#E1159_RS08915
HKClassic
158 212-160 227 nt · Forward (+)
E1159_RS08920GCF_900689605#E1159_RS08920
RROmpRCurrent focus
160 277-160 957 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024260245#NMF81_RS13290Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1437337
Simplified PFAM architecture for RROC_1437337
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1437337
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_024260245#NMF81_RS13290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900689605
Assembly8080_2#74 · Contighaploid
Genome composition4 183 120 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 45 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key