1 Response_reg#1
4-113 aa · 110 aa · 43.0% of protein
Raw token
Response_reg:4:3.63e-29:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1149_RS10540
Response regulator LytTR family
Clostridioides difficile · GCF_900688565
ClassRRTypeLytTRLength256 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900688565#E1149_RS10540Stable P2CS identifier used across views.
GenomeGCF_900688565Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 256 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 LytTR#2
157-254 aa · 98 aa · 38.3% of protein
Raw token
LytTR:157:9.48e-31:254:98:98- Raw architecture: Response_reg:4:3.63e-29:113:112:111#LytTR:157:9.48e-31:254:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900688565::NZ_CAADAW010000008.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54082-56059Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402379_02091RefSeq proteinWP_021422542.1
Context group ID
GCF_900688565::NZ_CAADAW010000008.1::G00042Context members
E1149_RS10540E1149_RS10545
Partner locus tags
E1149_RS10540E1149_RS10545
Partner old locus tags
SAMEA1402379_02091SAMEA1402379_02092
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021422542.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1149_RS10540Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402379_02091Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAADAW010000008.1Sequence record reported by the local genomic context database.
Genomic interval54 082-54 852 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 082-56 059 ntGCF_900688565::NZ_CAADAW010000008.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900688565::NZ_CAADAW010000008.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAADAW010000008.1All displayed genes belong to this local TCS context.
Neighborhood span54 082-56 059 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 082 nt56 059 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E1149_RS10540GCF_900688565#E1149_RS10540
RRLytTRCurrent focus
54 082-54 852 nt · Reverse (-)
E1149_RS10545GCF_900688565#E1149_RS10545
HKClassic
54 857-56 059 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS05425Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0673487
Simplified PFAM architecture for RROC_0673487
PFAM domain coverage: 206 / 256 aa (80.5%)
1 aa256 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[157-253]
- Domain count: 2
- Matched identifier: RROC_0673487
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 157-253 ; LytTR 157-253
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS05425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900688565
Assembly7614_7#47 · Contighaploid
Genome composition4 347 568 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 112 · HK 55 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key