1 Response_reg#1
5-113 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:5:2.84e-29:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1110_RS07905
Response regulator OmpR family
Clostridioides difficile · GCF_900687655
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900687655#E1110_RS07905Stable P2CS identifier used across views.
GenomeGCF_900687655Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-225 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:148:1.43e-30:225:78:77- Raw architecture: Response_reg:5:2.84e-29:113:110:111#Trans_reg_C:148:1.43e-30:225:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900687655::NZ_CAACZW010000005.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42548-44483Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402416_01589RefSeq proteinWP_011861224.1
Context group ID
GCF_900687655::NZ_CAACZW010000005.1::G00025Context members
E1110_RS07900E1110_RS07905
Partner locus tags
E1110_RS07900E1110_RS07905
Partner old locus tags
SAMEA1402416_01588SAMEA1402416_01589
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011861224.1Primary protein accession used for annex mappings.
UniProt accessionQ18BY3Primary UniProt accession resolved in the annex database.
UniProt IDQ18BY3_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1110_RS07905Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402416_01589Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAACZW010000005.1Sequence record reported by the local genomic context database.
Genomic interval43 779-44 483 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 548-44 483 ntGCF_900687655::NZ_CAACZW010000005.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900687655::NZ_CAACZW010000005.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAACZW010000005.1All displayed genes belong to this local TCS context.
Neighborhood span42 548-44 483 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 548 nt44 483 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E1110_RS07900GCF_900687655#E1110_RS07900
HKClassic
42 548-43 801 nt · Reverse (-)
E1110_RS07905GCF_900687655#E1110_RS07905
RROmpRCurrent focus
43 779-44 483 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0209045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862776
Simplified PFAM architecture for RROC_0862776
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0862776
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0209045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900687655
Assembly7614_4#63 · Contighaploid
Genome composition4 146 704 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 46 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key