1 HisKA#1
85-154 aa · 70 aa · 23.0% of protein
Raw token
HisKA:85:0.0000000000017:154:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E1110_RS06315
Histidine kinase, Classic
Clostridioides difficile · GCF_900687655
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900687655#E1110_RS06315Stable P2CS identifier used across views.
GenomeGCF_900687655Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 305 aa (57.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
201-304 aa · 104 aa · 34.1% of protein
Raw token
HATPase_c:201:7.49e-28:304:106:109- Raw architecture: HisKA:85:0.0000000000017:154:70:64#HATPase_c:201:7.49e-28:304:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900687655::NZ_CAACZW010000003.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span282376-283982Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA1402416_01272RefSeq proteinWP_021360229.1
Context group ID
GCF_900687655::NZ_CAACZW010000003.1::G00014Context members
E1110_RS06315E1110_RS06320
Partner locus tags
E1110_RS06315E1110_RS06320
Partner old locus tags
SAMEA1402416_01272SAMEA1402416_01273
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021360229.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE1110_RS06315Primary locus identifier stored in the genes table.
Old locus tagSAMEA1402416_01272Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CAACZW010000003.1Sequence record reported by the local genomic context database.
Genomic interval282 376-283 293 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span282 376-283 982 ntGCF_900687655::NZ_CAACZW010000003.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900687655::NZ_CAACZW010000003.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAACZW010000003.1All displayed genes belong to this local TCS context.
Neighborhood span282 376-283 982 nt1 607 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
282 376 nt283 982 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E1110_RS06315GCF_900687655#E1110_RS06315
HKClassicCurrent focus
282 376-283 293 nt · Reverse (-)
E1110_RS06320GCF_900687655#E1110_RS06320
RROmpR
283 293-283 982 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448845#QAQ_RS03000Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882095
Simplified PFAM architecture for HKOC_2882095
PFAM domain coverage: 171 / 305 aa (56.1%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-154] | HATPase_c[201-304]
- Domain count: 2
- Matched identifier: HKOC_2882095
- Positioned domains: HisKA 88-154 ; HATPase_c 201-304
Cluster members and taxonomy
Representative gene: GCF_000448845#QAQ_RS03000
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 33 over 33 total members. Page 1 / 1.
GCF_000448845#QAQ_RS03000 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900687655
Assembly7614_4#63 · Contighaploid
Genome composition4 146 704 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 46 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key