1 Response_reg#1
3-103 aa · 101 aa · 43.2% of protein
Raw token
Response_reg:3:2.19e-24:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DRZ98_RS00170
Response regulator NarL family
Bifidobacterium adolescentis · GCF_900445615
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900445615#DRZ98_RS00170Stable P2CS identifier used across views.
GenomeGCF_900445615Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 234 aa (67.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
173-228 aa · 56 aa · 23.9% of protein
Raw token
HTH_LUXR:173:1.16e-20:228:56:58- Raw architecture: Response_reg:3:2.19e-24:103:101:111#HTH_LUXR:173:1.16e-20:228:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900445615::NZ_UAQG01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46177-48095Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNCTC11814_00034RefSeq proteinWP_011743396.1
Context group ID
GCF_900445615::NZ_UAQG01000001.1::G00002Context members
DRZ98_RS00170DRZ98_RS00175
Partner locus tags
DRZ98_RS00170DRZ98_RS00175
Partner old locus tags
NCTC11814_00034NCTC11814_00035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011743396.1Primary protein accession used for annex mappings.
UniProt accessionA1A288Primary UniProt accession resolved in the annex database.
UniProt IDA1A288_BIFAADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDRZ98_RS00170Primary locus identifier stored in the genes table.
Old locus tagNCTC11814_00034Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_UAQG01000001.1Sequence record reported by the local genomic context database.
Genomic interval46 177-46 881 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 177-48 095 ntGCF_900445615::NZ_UAQG01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900445615::NZ_UAQG01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_UAQG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span46 177-48 095 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 177 nt48 095 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DRZ98_RS00170GCF_900445615#DRZ98_RS00170
RRNarLCurrent focus
46 177-46 881 nt · Reverse (-)
DRZ98_RS00175GCF_900445615#DRZ98_RS00175
HKClassic
46 881-48 095 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010425#BAD_RS05530Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047107
Simplified PFAM architecture for RROC_1047107
PFAM domain coverage: 155 / 234 aa (66.2%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[176-228]
- Domain count: 2
- Matched identifier: RROC_1047107
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 176-228 ; GerE 176-228
Cluster members and taxonomy
Representative gene: GCF_000010425#BAD_RS05530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_900445615
Assembly49964_F01 · Contighaploid
Genome composition2 204 993 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key