1 Response_reg#1
6-118 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:6:1.13e-28:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ29_RS08455
Response regulator NarL family
Clostridioides difficile · GCF_900243325
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900243325#DBQ29_RS08455Stable P2CS identifier used across views.
GenomeGCF_900243325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 215 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-207 aa · 55 aa · 25.6% of protein
Raw token
HTH_LUXR:153:7.99e-21:207:55:58- Raw architecture: Response_reg:6:1.13e-28:118:113:111#HTH_LUXR:153:7.99e-21:207:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900243325::NZ_OEZX01000083.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67428-69231Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243325::NZ_OEZX01000083.1::G00038Context members
DBQ29_RS08450DBQ29_RS08455
Partner locus tags
DBQ29_RS08450DBQ29_RS08455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107618445.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ29_RS08455Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZX01000083.1Sequence record reported by the local genomic context database.
Genomic interval68 584-69 231 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 428-69 231 ntGCF_900243325::NZ_OEZX01000083.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243325::NZ_OEZX01000083.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZX01000083.1All displayed genes belong to this local TCS context.
Neighborhood span67 428-69 231 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 428 nt69 231 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DBQ29_RS08450GCF_900243325#DBQ29_RS08450
HKClassic
67 428-68 591 nt · Forward (+)
DBQ29_RS08455GCF_900243325#DBQ29_RS08455
RRNarLCurrent focus
68 584-69 231 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243325#DBQ29_RS08455The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1933790
Simplified PFAM architecture for RROC_1933790
PFAM domain coverage: 168 / 215 aa (78.1%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-117] | GerE[152-207]
- Domain count: 2
- Matched identifier: RROC_1933790
- Positioned domains: Response_reg 6-117 ; GerE 152-207
Cluster members and taxonomy
Representative gene: GCF_900243325#DBQ29_RS08455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243325
AssemblyR 11402 · Scaffoldhaploid
Genome composition4 025 099 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key