1 Response_reg#1
4-112 aa · 109 aa · 56.8% of protein
Raw token
Response_reg:4:1.1e-37:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ37_RS17910
Response regulator OmpR family
Clostridioides difficile · GCF_900243285
ClassRRTypeOmpRLength192 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900243285#DBQ37_RS17910Stable P2CS identifier used across views.
GenomeGCF_900243285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length192 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 192 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-192 aa · 39 aa · 20.3% of protein
Raw token
Trans_reg_C:154:0.0000000000000571:192:39:77- Raw architecture: Response_reg:4:1.1e-37:112:110:111#Trans_reg_C:154:0.0000000000000571:192:39:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900243285::NZ_OEZZ01000091.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11198-11773Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243285::NZ_OEZZ01000091.1::G00045Context members
DBQ37_RS17910
Partner locus tags
DBQ37_RS17910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236877945.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ37_RS17910Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZZ01000091.1Sequence record reported by the local genomic context database.
Genomic interval11 198-11 773 nt576 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 198-11 773 ntGCF_900243285::NZ_OEZZ01000091.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243285::NZ_OEZZ01000091.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZZ01000091.1All displayed genes belong to this local TCS context.
Neighborhood span11 198-11 773 nt576 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 198 nt11 773 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DBQ37_RS17910GCF_900243285#DBQ37_RS17910
RROmpRCurrent focus
11 198-11 773 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449045#QCI_RS05675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202420
Simplified PFAM architecture for RROC_1202420
PFAM domain coverage: 183 / 230 aa (79.6%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[153-226]
- Domain count: 2
- Matched identifier: RROC_1202420
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 153-226 ; Trans_reg_C 153-226
Cluster members and taxonomy
Representative gene: GCF_000449045#QCI_RS05675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243285
AssemblySUC36 · Scaffoldhaploid
Genome composition4 150 540 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 49 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key