1 PAS_9#1
529-629 aa · 101 aa · 11.1% of protein
Raw token
PAS_9:529:0.0000527:629:101:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ37_RS16710
Histidine kinase, Classic
Clostridioides difficile · GCF_900243285
ClassHKTypeClassicLength910 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900243285#DBQ37_RS16710Stable P2CS identifier used across views.
GenomeGCF_900243285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length910 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage282 / 910 aa (31.0%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa910 aa
Domain-by-domain annotation3 items
2 HisKA#2
655-724 aa · 70 aa · 7.7% of protein
Raw token
HisKA:655:0.000000000000191:724:70:643 HATPase_c#3
771-881 aa · 111 aa · 12.2% of protein
Raw token
HATPase_c:771:4.87e-31:881:111:109- Raw architecture: PAS_9:529:0.0000527:629:101:102#HisKA:655:0.000000000000191:724:70:64#HATPase_c:771:4.87e-31:881:111:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900243285::NZ_OEZZ01000089.1::G00051
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span46453-49185Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243285::NZ_OEZZ01000089.1::G00051Context members
DBQ37_RS16710
Partner locus tags
DBQ37_RS16710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107572388.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ37_RS16710Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZZ01000089.1Sequence record reported by the local genomic context database.
Genomic interval46 453-49 185 nt2 733 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 453-49 185 ntGCF_900243285::NZ_OEZZ01000089.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243285::NZ_OEZZ01000089.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZZ01000089.1All displayed genes belong to this local TCS context.
Neighborhood span46 453-49 185 nt2 733 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 453 nt49 185 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DBQ37_RS16710GCF_900243285#DBQ37_RS16710
HKClassicCurrent focus
46 453-49 185 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243285#DBQ37_RS16710The current gene is the representative for this cluster.
PFAM architecturePAS_8 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0392269
Simplified PFAM architecture for HKOC_0392269
PFAM domain coverage: 339 / 910 aa (37.3%)
1 aa910 aa
PAS_8PAS_9HisKAHATPase_c
- Simplified architecture: PAS_8 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_8[303-356] | PAS_9[529-632] | HisKA[655-724] | HATPase_c[771-881]
- Domain count: 4
- Matched identifier: HKOC_0392269
- Positioned domains: PAS_8 303-356 ; PAS_9 529-632 ; HisKA 655-724 ; HATPase_c 771-881
Cluster members and taxonomy
Representative gene: GCF_900243285#DBQ37_RS16710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243285
AssemblySUC36 · Scaffoldhaploid
Genome composition4 150 540 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 49 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key