1 Response_reg#1
1-75 aa · 75 aa · 39.9% of protein
Raw token
Response_reg:1:9.12e-18:75:76:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ37_RS14655
Response regulator OmpR family
Clostridioides difficile · GCF_900243285
ClassRRTypeOmpRLength188 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_900243285#DBQ37_RS14655Stable P2CS identifier used across views.
GenomeGCF_900243285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length188 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 188 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa188 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
110-186 aa · 77 aa · 41.0% of protein
Raw token
Trans_reg_C:110:7.94e-29:186:77:77- Raw architecture: Response_reg:1:9.12e-18:75:76:111#Trans_reg_C:110:7.94e-29:186:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_900243285::NZ_OEZZ01000084.1::G00047
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span61850-65233Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243285::NZ_OEZZ01000084.1::G00047Context members
DBQ37_RS14655DBQ37_RS14660DBQ37_RS14665
Partner locus tags
DBQ37_RS14655DBQ37_RS14660DBQ37_RS14665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236877920.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ37_RS14655Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZZ01000084.1Sequence record reported by the local genomic context database.
Genomic interval61 850-62 416 nt567 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 850-65 233 ntGCF_900243285::NZ_OEZZ01000084.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243285::NZ_OEZZ01000084.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZZ01000084.1All displayed genes belong to this local TCS context.
Neighborhood span61 850-65 233 nt3 384 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 850 nt65 233 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DBQ37_RS14655GCF_900243285#DBQ37_RS14655
RROmpRCurrent focus
61 850-62 416 nt · Forward (+)
DBQ37_RS14660GCF_900243285#DBQ37_RS14660
HKClassic
62 488-64 503 nt · Forward (+)
DBQ37_RS14665GCF_900243285#DBQ37_RS14665
RROmpR
64 553-65 233 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243285#DBQ37_RS14655The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2174576
Simplified PFAM architecture for RROC_2174576
PFAM domain coverage: 150 / 188 aa (79.8%)
1 aa188 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-75] | Trans_reg_C[110-186]
- Domain count: 2
- Matched identifier: RROC_2174576
- Positioned domains: Response_reg 3-75 ; Trans_reg_C 110-186
Cluster members and taxonomy
Representative gene: GCF_900243285#DBQ37_RS14655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243285
AssemblySUC36 · Scaffoldhaploid
Genome composition4 150 540 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 49 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key