1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:3.53e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ37_RS14115
Response regulator OmpR family
Clostridioides difficile · GCF_900243285
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900243285#DBQ37_RS14115Stable P2CS identifier used across views.
GenomeGCF_900243285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 215 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
139-210 aa · 72 aa · 33.5% of protein
Raw token
Trans_reg_C:139:6.66e-27:210:77:77- Raw architecture: Response_reg:3:3.53e-33:112:111:111#Trans_reg_C:139:6.66e-27:210:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900243285::NZ_OEZZ01000083.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25404-27438Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243285::NZ_OEZZ01000083.1::G00036Context members
DBQ37_RS14115DBQ37_RS14120
Partner locus tags
DBQ37_RS14115DBQ37_RS14120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107572284.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ37_RS14115Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZZ01000083.1Sequence record reported by the local genomic context database.
Genomic interval25 404-26 051 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 404-27 438 ntGCF_900243285::NZ_OEZZ01000083.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243285::NZ_OEZZ01000083.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZZ01000083.1All displayed genes belong to this local TCS context.
Neighborhood span25 404-27 438 nt2 035 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 404 nt27 438 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DBQ37_RS14115GCF_900243285#DBQ37_RS14115
RROmpRCurrent focus
25 404-26 051 nt · Forward (+)
DBQ37_RS14120GCF_900243285#DBQ37_RS14120
HKClassic
26 044-27 438 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243285#DBQ37_RS14115The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1933789
Simplified PFAM architecture for RROC_1933789
PFAM domain coverage: 179 / 215 aa (83.3%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[140-210]
- Domain count: 2
- Matched identifier: RROC_1933789
- Positioned domains: Response_reg 3-110 ; Trans_reg_C 140-210
Cluster members and taxonomy
Representative gene: GCF_900243285#DBQ37_RS14115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243285
AssemblySUC36 · Scaffoldhaploid
Genome composition4 150 540 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 49 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key