1 HisKA#1
245-309 aa · 65 aa · 13.9% of protein
Raw token
HisKA:245:0.000000000002:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ37_RS12855
Histidine kinase, Classic
Clostridioides difficile · GCF_900243285
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900243285#DBQ37_RS12855Stable P2CS identifier used across views.
GenomeGCF_900243285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 466 aa (37.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
356-464 aa · 109 aa · 23.4% of protein
Raw token
HATPase_c:356:1.35e-19:464:109:109- Raw architecture: HisKA:245:0.000000000002:309:65:64#HATPase_c:356:1.35e-19:464:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900243285::NZ_OEZZ01000072.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span21238-22629Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243285::NZ_OEZZ01000072.1::G00033Context members
DBQ37_RS12855
Partner locus tags
DBQ37_RS12855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107572251.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ37_RS12855Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZZ01000072.1Sequence record reported by the local genomic context database.
Genomic interval21 238-22 629 nt1 392 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 238-22 629 ntGCF_900243285::NZ_OEZZ01000072.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243285::NZ_OEZZ01000072.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZZ01000072.1All displayed genes belong to this local TCS context.
Neighborhood span21 238-22 629 nt1 392 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 238 nt22 629 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DBQ37_RS12855GCF_900243285#DBQ37_RS12855
HKClassicCurrent focus
21 238-22 629 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243285#DBQ37_RS12855The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1772424
Simplified PFAM architecture for HKOC_1772424
PFAM domain coverage: 174 / 466 aa (37.3%)
1 aa466 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-309] | HATPase_c[356-464]
- Domain count: 2
- Matched identifier: HKOC_1772424
- Positioned domains: HisKA 245-309 ; HATPase_c 356-464
Cluster members and taxonomy
Representative gene: GCF_900243285#DBQ37_RS12855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243285
AssemblySUC36 · Scaffoldhaploid
Genome composition4 150 540 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 49 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key