1 Response_reg#1
9-117 aa · 109 aa · 65.7% of protein
Raw token
Response_reg:9:1.25e-31:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ37_RS02210
Response regulator, CheY family
Clostridioides difficile · GCF_900243285
ClassRRTypeCheYLength166 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900243285#DBQ37_RS02210Stable P2CS identifier used across views.
GenomeGCF_900243285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length166 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 166 aa (65.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa166 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:1.25e-31:117:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900243285::NZ_OEZZ01000027.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8471-10491Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243285::NZ_OEZZ01000027.1::G00017Context members
DBQ37_RS02210DBQ37_RS02215
Partner locus tags
DBQ37_RS02210DBQ37_RS02215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330404756.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ37_RS02210Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZZ01000027.1Sequence record reported by the local genomic context database.
Genomic interval8 471-8 971 nt501 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 471-10 491 ntGCF_900243285::NZ_OEZZ01000027.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243285::NZ_OEZZ01000027.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZZ01000027.1All displayed genes belong to this local TCS context.
Neighborhood span8 471-10 491 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 471 nt10 491 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DBQ37_RS02210GCF_900243285#DBQ37_RS02210
RRCheYCurrent focus
8 471-8 971 nt · Forward (+)
DBQ37_RS02215GCF_900243285#DBQ37_RS02215
HKClassic
9 169-10 491 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243285#DBQ37_RS02210The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2202114
Simplified PFAM architecture for RROC_2202114
PFAM domain coverage: 109 / 166 aa (65.7%)
1 aa166 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[9-117]
- Domain count: 1
- Matched identifier: RROC_2202114
- Positioned domains: Response_reg 9-117
Cluster members and taxonomy
Representative gene: GCF_900243285#DBQ37_RS02210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243285
AssemblySUC36 · Scaffoldhaploid
Genome composition4 150 540 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 49 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key