1 Response_reg#1
4-113 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:4:1.04e-23:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ25_RS01665
Response regulator OmpR family
Clostridioides difficile · GCF_900243265
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900243265#DBQ25_RS01665Stable P2CS identifier used across views.
GenomeGCF_900243265Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:149:9.73e-26:222:75:77- Raw architecture: Response_reg:4:1.04e-23:113:111:111#Trans_reg_C:149:9.73e-26:222:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900243265::NZ_OEZQ01000015.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span48189-48869Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243265::NZ_OEZQ01000015.1::G00033Context members
DBQ25_RS01665
Partner locus tags
DBQ25_RS01665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107597879.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ25_RS01665Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZQ01000015.1Sequence record reported by the local genomic context database.
Genomic interval48 189-48 869 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 189-48 869 ntGCF_900243265::NZ_OEZQ01000015.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243265::NZ_OEZQ01000015.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZQ01000015.1All displayed genes belong to this local TCS context.
Neighborhood span48 189-48 869 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 189 nt48 869 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DBQ25_RS01665GCF_900243265#DBQ25_RS01665
RROmpRCurrent focus
48 189-48 869 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243265#DBQ25_RS01665The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1460034
Simplified PFAM architecture for RROC_1460034
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1460034
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_900243265#DBQ25_RS01665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243265
AssemblyCH6223 · Scaffoldhaploid
Genome composition4 247 890 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 43 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key