1 Response_reg#1
2-112 aa · 111 aa · 47.6% of protein
Raw token
Response_reg:2:2.66e-18:112:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ24_RS15055
Response regulator LytTR family
Clostridioides difficile · GCF_900243205
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900243205#DBQ24_RS15055Stable P2CS identifier used across views.
GenomeGCF_900243205Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 233 aa (87.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
133-224 aa · 92 aa · 39.5% of protein
Raw token
LytTR:133:2e-23:224:97:98- Raw architecture: Response_reg:2:2.66e-18:112:114:111#LytTR:133:2e-23:224:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900243205::NZ_OEZU01000203.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7163-7865Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243205::NZ_OEZU01000203.1::G00009Context members
DBQ24_RS15055
Partner locus tags
DBQ24_RS15055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107576468.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ24_RS15055Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZU01000203.1Sequence record reported by the local genomic context database.
Genomic interval7 163-7 865 nt703 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 163-7 865 ntGCF_900243205::NZ_OEZU01000203.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243205::NZ_OEZU01000203.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZU01000203.1All displayed genes belong to this local TCS context.
Neighborhood span7 163-7 865 nt703 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 163 nt7 865 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DBQ24_RS15055GCF_900243205#DBQ24_RS15055
RRLytTRCurrent focus
7 163-7 865 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000452005#QUI_RS13095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962926
Simplified PFAM architecture for RROC_0962926
PFAM domain coverage: 204 / 237 aa (86.1%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_0962926
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 138-228 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_000452005#QUI_RS13095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243205
AssemblyCH6230 · Scaffoldhaploid
Genome composition4 117 774 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key