1 SBP_bac_3#1
58-278 aa · 221 aa · 36.5% of protein
Raw token
SBP_bac_3:58:1.05e-41:278:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ32_RS10120
Histidine kinase, Classic
Clostridioides difficile · GCF_900243185
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900243185#DBQ32_RS10120Stable P2CS identifier used across views.
GenomeGCF_900243185Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage361 / 606 aa (59.6%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation3 items
2 HisKA#2
446-483 aa · 38 aa · 6.3% of protein
Raw token
HisKA:446:0.0000375:483:38:643 HATPase_c#3
499-600 aa · 102 aa · 16.8% of protein
Raw token
HATPase_c:499:2.35e-23:600:103:109- Raw architecture: SBP_bac_3:58:1.05e-41:278:230:224#HisKA:446:0.0000375:483:38:64#HATPase_c:499:2.35e-23:600:103:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900243185::NZ_OEZR01000051.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18058-21200Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243185::NZ_OEZR01000051.1::G00028Context members
DBQ32_RS10120DBQ32_RS10125
Partner locus tags
DBQ32_RS10120DBQ32_RS10125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107578392.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ32_RS10120Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZR01000051.1Sequence record reported by the local genomic context database.
Genomic interval18 058-19 878 nt1 821 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 058-21 200 ntGCF_900243185::NZ_OEZR01000051.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243185::NZ_OEZR01000051.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZR01000051.1All displayed genes belong to this local TCS context.
Neighborhood span18 058-21 200 nt3 143 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 058 nt21 200 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DBQ32_RS10120GCF_900243185#DBQ32_RS10120
HKClassicCurrent focus
18 058-19 878 nt · Forward (+)
DBQ32_RS10125GCF_900243185#DBQ32_RS10125
RRNtrC
19 878-21 200 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243185#DBQ32_RS10120The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1028030
Simplified PFAM architecture for HKOC_1028030
PFAM domain coverage: 323 / 606 aa (53.3%)
1 aa606 aa
SBP_bac_3HATPase_c
- Simplified architecture: SBP_bac_3 + HATPase_c
- Raw architecture: SBP_bac_3[60-277] | HATPase_c[497-601]
- Domain count: 2
- Matched identifier: HKOC_1028030
- Positioned domains: SBP_bac_3 60-277 ; HATPase_c 497-601
Cluster members and taxonomy
Representative gene: GCF_900243185#DBQ32_RS10120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243185
AssemblyR 10870 · Scaffoldhaploid
Genome composition4 274 661 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key