1 HisKA#1
311-377 aa · 67 aa · 12.6% of protein
Raw token
HisKA:311:0.0000000000000124:377:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ06_RS06465
Histidine kinase, Classic
Clostridioides difficile · GCF_900243095
ClassHKTypeClassicLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900243095#DBQ06_RS06465Stable P2CS identifier used across views.
GenomeGCF_900243095Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 532 aa (28.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
430-515 aa · 86 aa · 16.2% of protein
Raw token
HATPase_c:430:0.0000000353:515:90:109- Raw architecture: HisKA:311:0.0000000000000124:377:67:64#HATPase_c:430:0.0000000353:515:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900243095::NZ_OEZG01000056.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9748-12031Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243095::NZ_OEZG01000056.1::G00039Context members
DBQ06_RS06465DBQ06_RS06470
Partner locus tags
DBQ06_RS06465DBQ06_RS06470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199855367.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ06_RS06465Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZG01000056.1Sequence record reported by the local genomic context database.
Genomic interval9 748-11 346 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 748-12 031 ntGCF_900243095::NZ_OEZG01000056.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243095::NZ_OEZG01000056.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZG01000056.1All displayed genes belong to this local TCS context.
Neighborhood span9 748-12 031 nt2 284 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 748 nt12 031 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DBQ06_RS06465GCF_900243095#DBQ06_RS06465
HKClassicCurrent focus
9 748-11 346 nt · Reverse (-)
DBQ06_RS06470GCF_900243095#DBQ06_RS06470
RROmpR
11 315-12 031 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900243095#DBQ06_RS06465The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1351418
Simplified PFAM architecture for HKOC_1351418
PFAM domain coverage: 191 / 532 aa (35.9%)
1 aa532 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[257-297] | HisKA[312-377] | HATPase_c[429-512]
- Domain count: 3
- Matched identifier: HKOC_1351418
- Positioned domains: HAMP 257-297 ; HisKA 312-377 ; HATPase_c 429-512
Cluster members and taxonomy
Representative gene: GCF_900243095#DBQ06_RS06465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243095
Assembly8785 · Scaffoldhaploid
Genome composition4 124 564 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key