1 HisKA#1
566-632 aa · 67 aa · 8.5% of protein
Raw token
HisKA:566:2.42e-18:632:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DBQ06_RS01590
Histidine kinase, Classic
Clostridioides difficile · GCF_900243095
ClassHKTypeClassicLength786 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900243095#DBQ06_RS01590Stable P2CS identifier used across views.
GenomeGCF_900243095Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length786 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 786 aa (21.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa786 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
679-783 aa · 105 aa · 13.4% of protein
Raw token
HATPase_c:679:0.000000000252:783:110:109- Raw architecture: HisKA:566:2.42e-18:632:67:64#HATPase_c:679:0.000000000252:783:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900243095::NZ_OEZG01000010.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9678-12726Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900243095::NZ_OEZG01000010.1::G00027Context members
DBQ06_RS01590DBQ06_RS01595
Partner locus tags
DBQ06_RS01590DBQ06_RS01595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236878607.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDBQ06_RS01590Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OEZG01000010.1Sequence record reported by the local genomic context database.
Genomic interval9 678-12 038 nt2 361 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 678-12 726 ntGCF_900243095::NZ_OEZG01000010.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900243095::NZ_OEZG01000010.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OEZG01000010.1All displayed genes belong to this local TCS context.
Neighborhood span9 678-12 726 nt3 049 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 678 nt12 726 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DBQ06_RS01590GCF_900243095#DBQ06_RS01590
HKClassicCurrent focus
9 678-12 038 nt · Reverse (-)
DBQ06_RS01595GCF_900243095#DBQ06_RS01595
RROmpR
12 010-12 726 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS01410Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0581633
Simplified PFAM architecture for HKOC_0581633
PFAM domain coverage: 172 / 786 aa (21.9%)
1 aa786 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[566-632] | HATPase_c[679-783]
- Domain count: 2
- Matched identifier: HKOC_0581633
- Positioned domains: HisKA 566-632 ; HATPase_c 679-783
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS01410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900243095
Assembly8785 · Scaffoldhaploid
Genome composition4 124 564 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key