1 HisKA#1
194-260 aa · 67 aa · 16.1% of protein
Raw token
HisKA:194:0.0000000000218:260:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CS924_RS02440
Histidine kinase, Classic
Clostridium paraputrificum · GCF_900217195
ClassHKTypeClassicLength415 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900217195#CS924_RS02440Stable P2CS identifier used across views.
GenomeGCF_900217195Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length415 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 415 aa (41.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa415 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
306-411 aa · 106 aa · 25.5% of protein
Raw token
HATPase_c:306:3.13e-26:411:106:109- Raw architecture: HisKA:194:0.0000000000218:260:67:64#HATPase_c:306:3.13e-26:411:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900217195::NZ_OBIQ01000003.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66431-68364Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900217195::NZ_OBIQ01000003.1::G00019Context members
CS924_RS02435CS924_RS02440
Partner locus tags
CS924_RS02435CS924_RS02440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099328979.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCS924_RS02440Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OBIQ01000003.1Sequence record reported by the local genomic context database.
Genomic interval67 117-68 364 nt1 248 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 431-68 364 ntGCF_900217195::NZ_OBIQ01000003.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900217195::NZ_OBIQ01000003.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OBIQ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span66 431-68 364 nt1 934 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 431 nt68 364 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CS924_RS02435GCF_900217195#CS924_RS02435
RROmpR
66 431-67 117 nt · Forward (+)
CS924_RS02440GCF_900217195#CS924_RS02440
HKClassicCurrent focus
67 117-68 364 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015561155#I2H90_RS03110Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2313417
Simplified PFAM architecture for HKOC_2313417
PFAM domain coverage: 173 / 415 aa (41.7%)
1 aa415 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[194-260] | HATPase_c[306-411]
- Domain count: 2
- Matched identifier: HKOC_2313417
- Positioned domains: HisKA 194-260 ; HATPase_c 306-411
Cluster members and taxonomy
Representative gene: GCF_015561155#I2H90_RS03110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_900217195
AssemblyASM90021719v1 · Scaffoldhaploid
Genome composition3 776 795 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 76 · HK 39 · RR 34CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key