1 Response_reg#1
9-118 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:9:5.29e-31:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2A27_RS00355
Response regulator OmpR family
Clostridioides difficile · GCF_900166535
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900166535#B2A27_RS00355Stable P2CS identifier used across views.
GenomeGCF_900166535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:156:3.22e-29:232:77:77- Raw architecture: Response_reg:9:5.29e-31:118:111:111#Trans_reg_C:156:3.22e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900166535::NZ_FUUU01000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80743-82901Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA2239366_00064RefSeq proteinWP_021366255.1
Context group ID
GCF_900166535::NZ_FUUU01000001.1::G00015Context members
B2A27_RS00355B2A27_RS00360
Partner locus tags
B2A27_RS00355B2A27_RS00360
Partner old locus tags
SAMEA2239366_00064SAMEA2239366_00065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021366255.1Primary protein accession used for annex mappings.
UniProt accessionA0A069AVD9Primary UniProt accession resolved in the annex database.
UniProt IDA0A069AVD9_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2A27_RS00355Primary locus identifier stored in the genes table.
Old locus tagSAMEA2239366_00064Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUUU01000001.1Sequence record reported by the local genomic context database.
Genomic interval80 743-81 450 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 743-82 901 ntGCF_900166535::NZ_FUUU01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900166535::NZ_FUUU01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUUU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span80 743-82 901 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 743 nt82 901 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2A27_RS00355GCF_900166535#B2A27_RS00355
RROmpRCurrent focus
80 743-81 450 nt · Forward (+)
B2A27_RS00360GCF_900166535#B2A27_RS00360
HKClassic
81 495-82 901 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448765#QC5_RS03115Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1018263
Simplified PFAM architecture for RROC_1018263
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1018263
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000448765#QC5_RS03115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900166535
Assembly11670_1#16 · Scaffoldhaploid
Genome composition4 155 465 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 46 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key