1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:7.78e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2B26_RS13165
Response regulator OmpR family
Clostridioides difficile · GCF_900166315
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900166315#B2B26_RS13165Stable P2CS identifier used across views.
GenomeGCF_900166315Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:152:7.99e-32:228:77:77- Raw architecture: Response_reg:5:7.78e-38:114:111:111#Trans_reg_C:152:7.99e-32:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900166315::NZ_FUTY01000016.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94897-96760Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA2239371_02645RefSeq proteinWP_003422314.1
Context group ID
GCF_900166315::NZ_FUTY01000016.1::G00007Context members
B2B26_RS13165B2B26_RS13170
Partner locus tags
B2B26_RS13165B2B26_RS13170
Partner old locus tags
SAMEA2239371_02645SAMEA2239371_02646
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003422314.1Primary protein accession used for annex mappings.
UniProt accessionD5Q9X1Primary UniProt accession resolved in the annex database.
UniProt IDD5Q9X1_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2B26_RS13165Primary locus identifier stored in the genes table.
Old locus tagSAMEA2239371_02645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUTY01000016.1Sequence record reported by the local genomic context database.
Genomic interval94 897-95 589 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span94 897-96 760 ntGCF_900166315::NZ_FUTY01000016.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900166315::NZ_FUTY01000016.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUTY01000016.1All displayed genes belong to this local TCS context.
Neighborhood span94 897-96 760 nt1 864 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 897 nt96 760 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2B26_RS13165GCF_900166315#B2B26_RS13165
RROmpRCurrent focus
94 897-95 589 nt · Forward (+)
B2B26_RS13170GCF_900166315#B2B26_RS13170
HKClassic
95 579-96 760 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0217720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200142
Simplified PFAM architecture for RROC_1200142
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1200142
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0217720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900166315
Assembly11670_1#21 · Scaffoldhaploid
Genome composition3 925 996 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 50 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key