1 Response_reg#1
3-112 aa · 110 aa · 74.8% of protein
Raw token
Response_reg:3:1.65e-30:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2B97_RS03300
Response regulator, CheY family
Clostridioides difficile · GCF_900166185
ClassRRTypeCheYLength147 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900166185#B2B97_RS03300Stable P2CS identifier used across views.
GenomeGCF_900166185Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length147 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 147 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa147 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.65e-30:112:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900166185::NZ_FUTL01000002.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36076-37727Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900166185::NZ_FUTL01000002.1::G00053Context members
B2B97_RS03300B2B97_RS03305
Partner locus tags
B2B97_RS03300B2B97_RS03305
Partner old locus tags
SAMEA2239402_00657
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144081901.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2B97_RS03300Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FUTL01000002.1Sequence record reported by the local genomic context database.
Genomic interval36 076-36 516 nt441 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 076-37 727 ntGCF_900166185::NZ_FUTL01000002.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900166185::NZ_FUTL01000002.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUTL01000002.1All displayed genes belong to this local TCS context.
Neighborhood span36 076-37 727 nt1 652 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 076 nt37 727 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2B97_RS03300GCF_900166185#B2B97_RS03300
RRCheYCurrent focus
36 076-36 516 nt · Forward (+)
B2B97_RS03305GCF_900166185#B2B97_RS03305
HKClassic
36 804-37 727 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016766995#JMW52_RS17220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0726041
Simplified PFAM architecture for RROC_0726041
PFAM domain coverage: 170 / 250 aa (68.0%)
1 aa250 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[153-212]
- Domain count: 2
- Matched identifier: RROC_0726041
- Positioned domains: Response_reg 3-112 ; Trans_reg_C 153-212
Cluster members and taxonomy
Representative gene: GCF_016766995#JMW52_RS17220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900166185
Assembly11670_1#54 · Scaffoldhaploid
Genome composition4 215 495 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 48 · RR 53CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key