1 HisKA#1
246-312 aa · 67 aa · 14.2% of protein
Raw token
HisKA:246:0.000000000000159:312:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2B89_RS01165
Histidine kinase, Classic
Clostridioides difficile · GCF_900165935
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900165935#B2B89_RS01165Stable P2CS identifier used across views.
GenomeGCF_900165935Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 472 aa (37.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
359-466 aa · 108 aa · 22.9% of protein
Raw token
HATPase_c:359:3.04e-28:466:108:109- Raw architecture: HisKA:246:0.000000000000159:312:67:64#HATPase_c:359:3.04e-28:466:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900165935::NZ_FUSO01000001.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span269574-271686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA2239379_00239RefSeq proteinWP_077708831.1
Context group ID
GCF_900165935::NZ_FUSO01000001.1::G00022Context members
B2B89_RS01160B2B89_RS01165
Partner locus tags
B2B89_RS01160B2B89_RS01165
Partner old locus tags
SAMEA2239379_00238SAMEA2239379_00239
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077708831.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2B89_RS01165Primary locus identifier stored in the genes table.
Old locus tagSAMEA2239379_00239Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUSO01000001.1Sequence record reported by the local genomic context database.
Genomic interval270 268-271 686 nt1 419 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span269 574-271 686 ntGCF_900165935::NZ_FUSO01000001.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165935::NZ_FUSO01000001.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUSO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span269 574-271 686 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
269 574 nt271 686 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2B89_RS01160GCF_900165935#B2B89_RS01160
RROmpR
269 574-270 278 nt · Forward (+)
B2B89_RS01165GCF_900165935#B2B89_RS01165
HKClassicCurrent focus
270 268-271 686 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003456975#CDIF102859_RS12805Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1699087
Simplified PFAM architecture for HKOC_1699087
PFAM domain coverage: 174 / 472 aa (36.9%)
1 aa472 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[246-310] | HATPase_c[359-467]
- Domain count: 2
- Matched identifier: HKOC_1699087
- Positioned domains: HisKA 246-310 ; HATPase_c 359-467
Cluster members and taxonomy
Representative gene: GCF_003456975#CDIF102859_RS12805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165935
Assembly11670_1#29 · Scaffoldhaploid
Genome composition4 157 621 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key