1 Response_reg#1
4-120 aa · 117 aa · 49.6% of protein
Raw token
Response_reg:4:1.46e-22:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2A55_RS04515
Response regulator LytTR family
Clostridioides difficile · GCF_900165845
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900165845#B2A55_RS04515Stable P2CS identifier used across views.
GenomeGCF_900165845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 236 aa (85.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-225 aa · 85 aa · 36.0% of protein
Raw token
LytTR:141:8.71e-19:225:92:98- Raw architecture: Response_reg:4:1.46e-22:120:119:111#LytTR:141:8.71e-19:225:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900165845::NZ_FUSD01000002.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span438777-439487Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375062_00895RefSeq proteinWP_021372948.1
Context group ID
GCF_900165845::NZ_FUSD01000002.1::G00028Context members
B2A55_RS04515
Partner locus tags
B2A55_RS04515
Partner old locus tags
SAMEA3375062_00895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021372948.1Primary protein accession used for annex mappings.
UniProt accessionA0A069AZK3Primary UniProt accession resolved in the annex database.
UniProt IDA0A069AZK3_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2A55_RS04515Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375062_00895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUSD01000002.1Sequence record reported by the local genomic context database.
Genomic interval438 777-439 487 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span438 777-439 487 ntGCF_900165845::NZ_FUSD01000002.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165845::NZ_FUSD01000002.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUSD01000002.1All displayed genes belong to this local TCS context.
Neighborhood span438 777-439 487 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
438 777 nt439 487 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B2A55_RS04515GCF_900165845#B2A55_RS04515
RRLytTRCurrent focus
438 777-439 487 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448765#QC5_RS02835Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0989893
Simplified PFAM architecture for RROC_0989893
PFAM domain coverage: 200 / 236 aa (84.7%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[142-225]
- Domain count: 2
- Matched identifier: RROC_0989893
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 142-225 ; LytTR 142-225
Cluster members and taxonomy
Representative gene: GCF_000448765#QC5_RS02835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165845
Assembly16852_2#90 · Scaffoldhaploid
Genome composition4 200 753 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key