1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:7.06e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2B07_RS14045
Response regulator OmpR family
Clostridioides difficile · GCF_900165615
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_900165615#B2B07_RS14045Stable P2CS identifier used across views.
GenomeGCF_900165615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.67e-22:223:75:77- Raw architecture: Response_reg:5:7.06e-23:114:111:111#Trans_reg_C:150:2.67e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_900165615::NZ_FURG01000007.1::G00005
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span76901-82625Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375005_02827RefSeq proteinWP_077717404.1
Context group ID
GCF_900165615::NZ_FURG01000007.1::G00005Context members
B2B07_RS14035B2B07_RS14040B2B07_RS14045B2B07_RS14050B2B07_RS14055
Partner locus tags
B2B07_RS14035B2B07_RS14040B2B07_RS14045B2B07_RS14050B2B07_RS14055
Partner old locus tags
SAMEA3375005_02825SAMEA3375005_02826SAMEA3375005_02827SAMEA3375005_02828SAMEA3375005_02829
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077717404.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2B07_RS14045Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375005_02827Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FURG01000007.1Sequence record reported by the local genomic context database.
Genomic interval79 715-80 395 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 901-82 625 ntGCF_900165615::NZ_FURG01000007.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165615::NZ_FURG01000007.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FURG01000007.1All displayed genes belong to this local TCS context.
Neighborhood span76 901-82 625 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 901 nt82 625 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
B2B07_RS14035GCF_900165615#B2B07_RS14035
RROmpR
76 901-77 578 nt · Forward (+)
B2B07_RS14040GCF_900165615#B2B07_RS14040
HKClassic
77 650-79 665 nt · Forward (+)
B2B07_RS14045GCF_900165615#B2B07_RS14045
RROmpRCurrent focus
79 715-80 395 nt · Forward (+)
B2B07_RS14050GCF_900165615#B2B07_RS14050
RROmpR
80 776-81 474 nt · Forward (+)
B2B07_RS14055GCF_900165615#B2B07_RS14055
HKClassic
81 510-82 625 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900165525#B2C42_RS15105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1459772
Simplified PFAM architecture for RROC_1459772
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1459772
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_900165525#B2C42_RS15105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165615
Assembly16852_2#33 · Scaffoldhaploid
Genome composition4 079 714 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 49 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key