1 Response_reg#1
6-115 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:6:1.69e-33:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2B07_RS00525
Response regulator OmpR family
Clostridioides difficile · GCF_900165615
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900165615#B2B07_RS00525Stable P2CS identifier used across views.
GenomeGCF_900165615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 238 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-235 aa · 76 aa · 31.9% of protein
Raw token
Trans_reg_C:160:6.21e-30:235:77:77- Raw architecture: Response_reg:6:1.69e-33:115:111:111#Trans_reg_C:160:6.21e-30:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900165615::NZ_FURG01000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116153-119177Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375005_00105RefSeq proteinWP_038810969.1
Context group ID
GCF_900165615::NZ_FURG01000001.1::G00016Context members
B2B07_RS00525B2B07_RS00530
Partner locus tags
B2B07_RS00525B2B07_RS00530
Partner old locus tags
SAMEA3375005_00105SAMEA3375005_00106
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_038810969.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2B07_RS00525Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375005_00105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FURG01000001.1Sequence record reported by the local genomic context database.
Genomic interval116 153-116 869 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 153-119 177 ntGCF_900165615::NZ_FURG01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165615::NZ_FURG01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FURG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span116 153-119 177 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 153 nt119 177 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2B07_RS00525GCF_900165615#B2B07_RS00525
RROmpRCurrent focus
116 153-116 869 nt · Forward (+)
B2B07_RS00530GCF_900165615#B2B07_RS00530
HKClassic
116 841-119 177 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036698175#LFA86_RS16570Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0953563
Simplified PFAM architecture for RROC_0953563
PFAM domain coverage: 183 / 238 aa (76.9%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[161-234]
- Domain count: 2
- Matched identifier: RROC_0953563
- Positioned domains: Response_reg 6-114 ; Trans_reg_C 161-234
Cluster members and taxonomy
Representative gene: GCF_036698175#LFA86_RS16570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165615
Assembly16852_2#33 · Scaffoldhaploid
Genome composition4 079 714 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 49 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key