1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.0000187:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2B39_RS14855
Histidine kinase, Classic
Clostridioides difficile · GCF_900165575
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900165575#B2B39_RS14855Stable P2CS identifier used across views.
GenomeGCF_900165575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 305 aa (74.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000906:150:66:643 HATPase_c#3
197-303 aa · 107 aa · 35.1% of protein
Raw token
HATPase_c:197:1.66e-30:303:107:109- Raw architecture: HAMP:4:0.0000187:56:53:69#HisKA:85:0.0000000906:150:66:64#HATPase_c:197:1.66e-30:303:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900165575::NZ_FURC01000009.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61912-63528Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375000_02978RefSeq proteinWP_070421136.1
Context group ID
GCF_900165575::NZ_FURC01000009.1::G00031Context members
B2B39_RS14855B2B39_RS14860
Partner locus tags
B2B39_RS14855B2B39_RS14860
Partner old locus tags
SAMEA3375000_02978SAMEA3375000_02979
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070421136.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2B39_RS14855Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375000_02978Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FURC01000009.1Sequence record reported by the local genomic context database.
Genomic interval61 912-62 829 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 912-63 528 ntGCF_900165575::NZ_FURC01000009.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165575::NZ_FURC01000009.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FURC01000009.1All displayed genes belong to this local TCS context.
Neighborhood span61 912-63 528 nt1 617 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 912 nt63 528 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2B39_RS14855GCF_900165575#B2B39_RS14855
HKClassicCurrent focus
61 912-62 829 nt · Reverse (-)
B2B39_RS14860GCF_900165575#B2B39_RS14860
RROmpR
62 836-63 528 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482065#CDIF28666_RS01640Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882373
Simplified PFAM architecture for HKOC_2882373
PFAM domain coverage: 169 / 305 aa (55.4%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[199-303]
- Domain count: 2
- Matched identifier: HKOC_2882373
- Positioned domains: HisKA 85-148 ; HATPase_c 199-303
Cluster members and taxonomy
Representative gene: GCF_003482065#CDIF28666_RS01640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165575
Assembly16852_2#28 · Scaffoldhaploid
Genome composition4 144 567 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key