1 HisKA#1
118-172 aa · 55 aa · 16.2% of protein
Raw token
HisKA:118:0.0000974:172:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2C76_RS06685
Histidine kinase, Classic
Clostridioides difficile · GCF_900165545
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900165545#B2C76_RS06685Stable P2CS identifier used across views.
GenomeGCF_900165545Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 339 aa (46.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
228-328 aa · 101 aa · 29.8% of protein
Raw token
HATPase_c:228:7.15e-18:328:101:109- Raw architecture: HisKA:118:0.0000974:172:60:64#HATPase_c:228:7.15e-18:328:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900165545::NZ_FUQZ01000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span344319-346012Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3374996_01354RefSeq proteinWP_077717125.1
Context group ID
GCF_900165545::NZ_FUQZ01000002.1::G00023Context members
B2C76_RS06685B2C76_RS06690
Partner locus tags
B2C76_RS06685B2C76_RS06690
Partner old locus tags
SAMEA3374996_01354SAMEA3374996_01355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077717125.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2C76_RS06685Primary locus identifier stored in the genes table.
Old locus tagSAMEA3374996_01354Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUQZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval344 319-345 338 nt1 020 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span344 319-346 012 ntGCF_900165545::NZ_FUQZ01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165545::NZ_FUQZ01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUQZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span344 319-346 012 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
344 319 nt346 012 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2C76_RS06685GCF_900165545#B2C76_RS06685
HKClassicCurrent focus
344 319-345 338 nt · Reverse (-)
B2C76_RS06690GCF_900165545#B2C76_RS06690
RROmpR
345 332-346 012 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900165525#B2C42_RS06440Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2841799
Simplified PFAM architecture for HKOC_2841799
PFAM domain coverage: 105 / 339 aa (31.0%)
1 aa339 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[223-327]
- Domain count: 1
- Matched identifier: HKOC_2841799
- Positioned domains: HATPase_c 223-327
Cluster members and taxonomy
Representative gene: GCF_900165525#B2C42_RS06440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165545
Assembly16852_2#24 · Scaffoldhaploid
Genome composition4 080 669 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 49 · RR 54CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key