Gene detail

B2A17_RS07645

Histidine kinase, Classic

Clostridioides difficile · GCF_900165365

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength430 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_900165365#B2A17_RS07645Stable P2CS identifier used across views.

GenomeGCF_900165365Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides

Selected clusterHKOC_2179866Run 6 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_077707519.1 · MIST4 B2A17_RS07645RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length430 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage177 / 430 aa (41.2%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa430 aa

Domain-by-domain annotation2 items

1 HisKA#1

207-272 aa · 66 aa · 15.3% of protein

Raw tokenHisKA:207:0.000000000000018:272:66:64

2 HATPase_c#2

320-430 aa · 111 aa · 25.8% of protein

Raw tokenHATPase_c:320:9.83e-29:430:111:109

Raw architecture: HisKA:207:0.000000000000018:272:66:64#HATPase_c:320:9.83e-29:430:111:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_900165365::NZ_FUQH01000002.1::G00058

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span828618-830590Genomic interval covered by the local TCS group.

Identifiers

Old locus tagSAMEA3375151_01531RefSeq proteinWP_077707519.1

Context group IDGCF_900165365::NZ_FUQH01000002.1::G00058

Context members

B2A17_RS07645B2A17_RS07650

Partner locus tags

B2A17_RS07645B2A17_RS07650

Partner old locus tags

SAMEA3375151_01531SAMEA3375151_01532

Partner protein IDs

WP_077707519.1 WP_077707520.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_077707519.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagB2A17_RS07645Primary locus identifier stored in the genes table.

Old locus tagSAMEA3375151_01531Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_FUQH01000002.1Sequence record reported by the local genomic context database.

Genomic interval828 618-829 910 nt1 293 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span828 618-830 590 ntGCF_900165365::NZ_FUQH01000002.1::G00058

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_900165365::NZ_FUQH01000002.1::G00058

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_FUQH01000002.1All displayed genes belong to this local TCS context.

Neighborhood span828 618-830 590 nt1 973 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

828 618 nt830 590 nt

+-B2A17_RS07645 B2A17_RS07650

Neighborhood gene cards

2 genes in the current local neighborhood.

B2A17_RS07645GCF_900165365#B2A17_RS07645

HKClassicCurrent focus

828 618-829 910 nt · Reverse (-)

Old locus SAMEA3375151_01531RefSeq WP_077707519.1

Open current gene

B2A17_RS07650GCF_900165365#B2A17_RS07650

RROmpR

829 904-830 590 nt · Reverse (-)

Old locus SAMEA3375151_01532RefSeq WP_077707520.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2179866HK

Run 61 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_2179866Run 6 · HK · 1 sequences

Representative sequenceGCF_900165365#B2A17_RS07645The current gene is the representative for this cluster.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_2179866

Simplified PFAM architecture for HKOC_2179866

PFAM domain coverage: 174 / 430 aa (40.5%)

1 aa430 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[208-272] | HATPase_c[321-429]
Domain count: 2
Matched identifier: HKOC_2179866
Positioned domains: HisKA 208-272 ; HATPase_c 321-429

Cluster members and taxonomy

Representative gene: GCF_900165365#B2A17_RS07645

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165365

Assembly16780_8#85 · Scaffoldhaploid

Genome composition4 110 442 bp · 29,0% GCClostridioides difficile

Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides

Open genome Search genes in genome Search HK genes NCBI assembly files

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