1 Response_reg#1
5-117 aa · 113 aa · 48.7% of protein
Raw token
Response_reg:5:2.11e-22:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2A83_RS07885
Response regulator, unclassified
Clostridioides difficile · GCF_900165305
ClassRRTypeunclassifiedLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900165305#B2A83_RS07885Stable P2CS identifier used across views.
GenomeGCF_900165305Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 232 aa (66.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
186-226 aa · 41 aa · 17.7% of protein
Raw token
HTH_AraC:186:0.0000363:226:41:42- Raw architecture: Response_reg:5:2.11e-22:117:113:111#HTH_AraC:186:0.0000363:226:41:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900165305::NZ_FUQA01000003.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span163239-165556Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375143_01576RefSeq proteinWP_074049226.1
Context group ID
GCF_900165305::NZ_FUQA01000003.1::G00033Context members
B2A83_RS07885B2A83_RS07890
Partner locus tags
B2A83_RS07885B2A83_RS07890
Partner old locus tags
SAMEA3375143_01576SAMEA3375143_01577
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074049226.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2A83_RS07885Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375143_01576Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUQA01000003.1Sequence record reported by the local genomic context database.
Genomic interval163 239-163 937 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span163 239-165 556 ntGCF_900165305::NZ_FUQA01000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165305::NZ_FUQA01000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUQA01000003.1All displayed genes belong to this local TCS context.
Neighborhood span163 239-165 556 nt2 318 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 239 nt165 556 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2A83_RS07885GCF_900165305#B2A83_RS07885
RRunclassifiedCurrent focus
163 239-163 937 nt · Reverse (-)
B2A83_RS07890GCF_900165305#B2A83_RS07890
HKClassic
164 051-165 556 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301405#BGU19_RS02935Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1127117
Simplified PFAM architecture for RROC_1127117
PFAM domain coverage: 189 / 232 aa (81.5%)
1 aa232 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[151-227]
- Domain count: 2
- Matched identifier: RROC_1127117
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 151-227 ; HTH_18 151-227
Cluster members and taxonomy
Representative gene: GCF_002301405#BGU19_RS02935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165305
Assembly16780_8#77 · Scaffoldhaploid
Genome composition4 225 485 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key