1 HisKA#1
196-255 aa · 60 aa · 15.8% of protein
Raw token
HisKA:196:0.00000000165:255:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2A71_RS06320
Histidine kinase, Classic
Clostridioides difficile · GCF_900165185
ClassHKTypeClassicLength379 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900165185#B2A71_RS06320Stable P2CS identifier used across views.
GenomeGCF_900165185Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length379 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage139 / 379 aa (36.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa379 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
301-379 aa · 79 aa · 20.8% of protein
Raw token
HATPase_c:301:0.0000000000112:379:79:109- Raw architecture: HisKA:196:0.00000000165:255:60:64#HATPase_c:301:0.0000000000112:379:79:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900165185::NZ_FUPP01000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span167667-169497Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375109_01286RefSeq proteinWP_254048839.1
Context group ID
GCF_900165185::NZ_FUPP01000002.1::G00023Context members
B2A71_RS06320B2A71_RS06325
Partner locus tags
B2A71_RS06320B2A71_RS06325
Partner old locus tags
SAMEA3375109_01286SAMEA3375109_01287
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254048839.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2A71_RS06320Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375109_01286Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUPP01000002.1Sequence record reported by the local genomic context database.
Genomic interval167 667-168 806 nt1 140 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span167 667-169 497 ntGCF_900165185::NZ_FUPP01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165185::NZ_FUPP01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUPP01000002.1All displayed genes belong to this local TCS context.
Neighborhood span167 667-169 497 nt1 831 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
167 667 nt169 497 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2A71_RS06320GCF_900165185#B2A71_RS06320
HKClassicCurrent focus
167 667-168 806 nt · Reverse (-)
B2A71_RS06325GCF_900165185#B2A71_RS06325
RROmpR
168 793-169 497 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900164745#B2C22_RS05030Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2626237
Simplified PFAM architecture for HKOC_2626237
PFAM domain coverage: 141 / 379 aa (37.2%)
1 aa379 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[193-255] | HATPase_c[302-379]
- Domain count: 2
- Matched identifier: HKOC_2626237
- Positioned domains: HisKA 193-255 ; HATPase_c 302-379
Cluster members and taxonomy
Representative gene: GCF_900164745#B2C22_RS05030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165185
Assembly16780_8#43 · Scaffoldhaploid
Genome composition4 147 832 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key