1 HisKA#1
123-188 aa · 66 aa · 19.1% of protein
Raw token
HisKA:123:0.000000001:188:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2C25_RS17150
Histidine kinase, Classic
Clostridioides difficile · GCF_900165065
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900165065#B2C25_RS17150Stable P2CS identifier used across views.
GenomeGCF_900165065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 345 aa (49.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
234-337 aa · 104 aa · 30.1% of protein
Raw token
HATPase_c:234:5.2e-28:337:104:109- Raw architecture: HisKA:123:0.000000001:188:66:64#HATPase_c:234:5.2e-28:337:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900165065::NZ_FUPD01000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90669-92401Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375076_03437RefSeq proteinWP_070421158.1
Context group ID
GCF_900165065::NZ_FUPD01000010.1::G00001Context members
B2C25_RS17150B2C25_RS17155
Partner locus tags
B2C25_RS17150B2C25_RS17155
Partner old locus tags
SAMEA3375076_03437SAMEA3375076_03438
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070421158.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2C25_RS17150Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375076_03437Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUPD01000010.1Sequence record reported by the local genomic context database.
Genomic interval90 669-91 706 nt1 038 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span90 669-92 401 ntGCF_900165065::NZ_FUPD01000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165065::NZ_FUPD01000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUPD01000010.1All displayed genes belong to this local TCS context.
Neighborhood span90 669-92 401 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 669 nt92 401 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2C25_RS17150GCF_900165065#B2C25_RS17150
HKClassicCurrent focus
90 669-91 706 nt · Reverse (-)
B2C25_RS17155GCF_900165065#B2C25_RS17155
RROmpR
91 715-92 401 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003482065#CDIF28666_RS18715Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2819931
Simplified PFAM architecture for HKOC_2819931
PFAM domain coverage: 171 / 345 aa (49.6%)
1 aa345 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-188] | HATPase_c[234-339]
- Domain count: 2
- Matched identifier: HKOC_2819931
- Positioned domains: HisKA 124-188 ; HATPase_c 234-339
Cluster members and taxonomy
Representative gene: GCF_003482065#CDIF28666_RS18715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165065
Assembly16780_8#10 · Scaffoldhaploid
Genome composition4 147 498 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key