1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:3.06e-32:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2C25_RS04465
Response regulator OmpR family
Clostridioides difficile · GCF_900165065
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900165065#B2C25_RS04465Stable P2CS identifier used across views.
GenomeGCF_900165065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 232 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 32.3% of protein
Raw token
Trans_reg_C:155:3.4e-27:229:75:77- Raw architecture: Response_reg:6:3.06e-32:115:111:111#Trans_reg_C:155:3.4e-27:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900165065::NZ_FUPD01000001.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span975853-979287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375076_00891RefSeq proteinWP_003439430.1
Context group ID
GCF_900165065::NZ_FUPD01000001.1::G00032Context members
B2C25_RS04465B2C25_RS04470
Partner locus tags
B2C25_RS04465B2C25_RS04470
Partner old locus tags
SAMEA3375076_00891SAMEA3375076_00892
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003439430.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N2Q5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N2Q5_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2C25_RS04465Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375076_00891Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUPD01000001.1Sequence record reported by the local genomic context database.
Genomic interval975 853-976 551 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span975 853-979 287 ntGCF_900165065::NZ_FUPD01000001.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165065::NZ_FUPD01000001.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUPD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span975 853-979 287 nt3 435 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
975 853 nt979 287 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2C25_RS04465GCF_900165065#B2C25_RS04465
RROmpRCurrent focus
975 853-976 551 nt · Reverse (-)
B2C25_RS04470GCF_900165065#B2C25_RS04470
HKClassic
976 585-979 287 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0209450Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119293
Simplified PFAM architecture for RROC_1119293
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_1119293
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0209450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165065
Assembly16780_8#10 · Scaffoldhaploid
Genome composition4 147 498 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key