1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.73e-19:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2C25_RS03530
Response regulator OmpR family
Clostridioides difficile · GCF_900165065
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900165065#B2C25_RS03530Stable P2CS identifier used across views.
GenomeGCF_900165065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 34.1% of protein
Raw token
Trans_reg_C:147:2.92e-21:223:78:77- Raw architecture: Response_reg:5:1.73e-19:114:111:111#Trans_reg_C:147:2.92e-21:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900165065::NZ_FUPD01000001.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span795326-796006Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375076_00715RefSeq proteinWP_009897205.1
Context group ID
GCF_900165065::NZ_FUPD01000001.1::G00028Context members
B2C25_RS03530
Partner locus tags
B2C25_RS03530
Partner old locus tags
SAMEA3375076_00715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009897205.1Primary protein accession used for annex mappings.
UniProt accessionQ188B3Primary UniProt accession resolved in the annex database.
UniProt IDQ188B3_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2C25_RS03530Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375076_00715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUPD01000001.1Sequence record reported by the local genomic context database.
Genomic interval795 326-796 006 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span795 326-796 006 ntGCF_900165065::NZ_FUPD01000001.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900165065::NZ_FUPD01000001.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUPD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span795 326-796 006 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
795 326 nt796 006 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B2C25_RS03530GCF_900165065#B2C25_RS03530
RROmpRCurrent focus
795 326-796 006 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS11125Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407978
Simplified PFAM architecture for RROC_1407978
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1407978
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS11125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900165065
Assembly16780_8#10 · Scaffoldhaploid
Genome composition4 147 498 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key