1 Response_reg#1
3-112 aa · 110 aa · 50.2% of protein
Raw token
Response_reg:3:2.52e-24:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2C09_RS02150
Response regulator OmpR family
Clostridioides difficile · GCF_900164495
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900164495#B2C09_RS02150Stable P2CS identifier used across views.
GenomeGCF_900164495Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 219 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 34.2% of protein
Raw token
Trans_reg_C:145:1.44e-20:219:76:77- Raw architecture: Response_reg:3:2.52e-24:112:111:111#Trans_reg_C:145:1.44e-20:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900164495::NZ_FUMG01000001.1::G00056
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span458068-458727Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375120_00430RefSeq proteinWP_077746899.1
Context group ID
GCF_900164495::NZ_FUMG01000001.1::G00056Context members
B2C09_RS02150
Partner locus tags
B2C09_RS02150
Partner old locus tags
SAMEA3375120_00430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_077746899.1Primary protein accession used for annex mappings.
UniProt accessionA0A413DIP6Primary UniProt accession resolved in the annex database.
UniProt IDA0A413DIP6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2C09_RS02150Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375120_00430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUMG01000001.1Sequence record reported by the local genomic context database.
Genomic interval458 068-458 727 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span458 068-458 727 ntGCF_900164495::NZ_FUMG01000001.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900164495::NZ_FUMG01000001.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUMG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span458 068-458 727 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
458 068 nt458 727 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B2C09_RS02150GCF_900164495#B2C09_RS02150
RROmpRCurrent focus
458 068-458 727 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460255#DWX07_RS04315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1777277
Simplified PFAM architecture for RROC_1777277
PFAM domain coverage: 184 / 219 aa (84.0%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1777277
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_003460255#DWX07_RS04315
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 15 over 15 total members. Page 1 / 1.
GCF_003460255#DWX07_RS04315 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900164495
Assembly16780_8#54 · Scaffoldhaploid
Genome composition4 168 589 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key