1 HisKA#1
553-619 aa · 67 aa · 8.7% of protein
Raw token
HisKA:553:1.45e-18:619:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2C23_RS01920
Histidine kinase, Classic
Clostridioides difficile · GCF_900164445
ClassHKTypeClassicLength773 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900164445#B2C23_RS01920Stable P2CS identifier used across views.
GenomeGCF_900164445Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length773 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 773 aa (22.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
666-770 aa · 105 aa · 13.6% of protein
Raw token
HATPase_c:666:0.000000000402:770:110:109- Raw architecture: HisKA:553:1.45e-18:619:67:64#HATPase_c:666:0.000000000402:770:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900164445::NZ_FUMO01000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span417313-420337Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375124_00388RefSeq proteinWP_074048875.1
Context group ID
GCF_900164445::NZ_FUMO01000001.1::G00011Context members
B2C23_RS01920B2C23_RS01925
Partner locus tags
B2C23_RS01920B2C23_RS01925
Partner old locus tags
SAMEA3375124_00388SAMEA3375124_00389
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074048875.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2C23_RS01920Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375124_00388Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUMO01000001.1Sequence record reported by the local genomic context database.
Genomic interval417 313-419 634 nt2 322 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span417 313-420 337 ntGCF_900164445::NZ_FUMO01000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900164445::NZ_FUMO01000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUMO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span417 313-420 337 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
417 313 nt420 337 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2C23_RS01920GCF_900164445#B2C23_RS01920
HKClassicCurrent focus
417 313-419 634 nt · Reverse (-)
B2C23_RS01925GCF_900164445#B2C23_RS01925
RROmpR
419 621-420 337 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002301405#BGU19_RS00900Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0611361
Simplified PFAM architecture for HKOC_0611361
PFAM domain coverage: 172 / 773 aa (22.3%)
1 aa773 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[553-619] | HATPase_c[666-770]
- Domain count: 2
- Matched identifier: HKOC_0611361
- Positioned domains: HisKA 553-619 ; HATPase_c 666-770
Cluster members and taxonomy
Representative gene: GCF_002301405#BGU19_RS00900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900164445
Assembly16780_8#58 · Scaffoldhaploid
Genome composition4 222 769 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key