1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000574:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2B06_RS02875
Histidine kinase, Classic
Clostridioides difficile · GCF_900164385
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_900164385#B2B06_RS02875Stable P2CS identifier used across views.
GenomeGCF_900164385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 671 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
565-668 aa · 104 aa · 15.5% of protein
Raw token
HATPase_c:565:3.68e-30:668:104:109- Raw architecture: HisKA:449:0.00000000574:514:66:64#HATPase_c:565:3.68e-30:668:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_900164385::NZ_FUMY01000001.1::G00023
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span707342-713066Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375084_00585RefSeq proteinWP_200801745.1
Context group ID
GCF_900164385::NZ_FUMY01000001.1::G00023Context members
B2B06_RS02860B2B06_RS02865B2B06_RS02870B2B06_RS02875B2B06_RS02880
Partner locus tags
B2B06_RS02860B2B06_RS02865B2B06_RS02870B2B06_RS02875B2B06_RS02880
Partner old locus tags
SAMEA3375084_00582SAMEA3375084_00583SAMEA3375084_00584SAMEA3375084_00585SAMEA3375084_00586
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_200801745.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2B06_RS02875Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375084_00585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUMY01000001.1Sequence record reported by the local genomic context database.
Genomic interval710 302-712 317 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span707 342-713 066 ntGCF_900164385::NZ_FUMY01000001.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900164385::NZ_FUMY01000001.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUMY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span707 342-713 066 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
707 342 nt713 066 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
B2B06_RS02860GCF_900164385#B2B06_RS02860
HKClassic
707 342-708 457 nt · Reverse (-)
B2B06_RS02865GCF_900164385#B2B06_RS02865
RROmpR
708 493-709 191 nt · Reverse (-)
B2B06_RS02870GCF_900164385#B2B06_RS02870
RROmpR
709 572-710 252 nt · Reverse (-)
B2B06_RS02875GCF_900164385#B2B06_RS02875
HKClassicCurrent focus
710 302-712 317 nt · Reverse (-)
B2B06_RS02880GCF_900164385#B2B06_RS02880
RROmpR
712 389-713 066 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900164385#B2B06_RS02875The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0845002
Simplified PFAM architecture for HKOC_0845002
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0845002
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_900164385#B2B06_RS02875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900164385
Assembly16780_8#18 · Scaffoldhaploid
Genome composition4 448 160 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 48 · RR 54CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key