1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:1.98e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2B06_RS02495
Response regulator OmpR family
Clostridioides difficile · GCF_900164385
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900164385#B2B06_RS02495Stable P2CS identifier used across views.
GenomeGCF_900164385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:146:7.59e-31:219:77:77- Raw architecture: Response_reg:4:1.98e-34:113:111:111#Trans_reg_C:146:7.59e-31:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900164385::NZ_FUMY01000001.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span626797-628595Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375084_00506RefSeq proteinWP_077710569.1
Context group ID
GCF_900164385::NZ_FUMY01000001.1::G00021Context members
B2B06_RS02490B2B06_RS02495
Partner locus tags
B2B06_RS02490B2B06_RS02495
Partner old locus tags
SAMEA3375084_00505SAMEA3375084_00506
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077710569.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2B06_RS02495Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375084_00506Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUMY01000001.1Sequence record reported by the local genomic context database.
Genomic interval627 924-628 595 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span626 797-628 595 ntGCF_900164385::NZ_FUMY01000001.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900164385::NZ_FUMY01000001.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUMY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span626 797-628 595 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
626 797 nt628 595 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2B06_RS02490GCF_900164385#B2B06_RS02490
HKClassic
626 797-627 927 nt · Reverse (-)
B2B06_RS02495GCF_900164385#B2B06_RS02495
RROmpRCurrent focus
627 924-628 595 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029310935#P2W93_RS04415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1617037
Simplified PFAM architecture for RROC_1617037
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1617037
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_029310935#P2W93_RS04415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900164385
Assembly16780_8#18 · Scaffoldhaploid
Genome composition4 448 160 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 104 · HK 48 · RR 54CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key