1 HisKA#1
122-175 aa · 54 aa · 16.1% of protein
Raw token
HisKA:122:0.00000297:175:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2C60_RS09240
Histidine kinase, Classic
Clostridioides difficile · GCF_900164195
ClassHKTypeClassicLength335 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900164195#B2C60_RS09240Stable P2CS identifier used across views.
GenomeGCF_900164195Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length335 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 335 aa (49.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa335 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-331 aa · 111 aa · 33.1% of protein
Raw token
HATPase_c:221:1.84e-20:331:111:109- Raw architecture: HisKA:122:0.00000297:175:60:64#HATPase_c:221:1.84e-20:331:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900164195::NZ_FULW01000003.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span286414-288089Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375129_01858RefSeq proteinWP_021422580.1
Context group ID
GCF_900164195::NZ_FULW01000003.1::G00058Context members
B2C60_RS09240B2C60_RS09245
Partner locus tags
B2C60_RS09240B2C60_RS09245
Partner old locus tags
SAMEA3375129_01858SAMEA3375129_01859
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021422580.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2C60_RS09240Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375129_01858Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FULW01000003.1Sequence record reported by the local genomic context database.
Genomic interval286 414-287 421 nt1 008 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span286 414-288 089 ntGCF_900164195::NZ_FULW01000003.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900164195::NZ_FULW01000003.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FULW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span286 414-288 089 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
286 414 nt288 089 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2C60_RS09240GCF_900164195#B2C60_RS09240
HKClassicCurrent focus
286 414-287 421 nt · Reverse (-)
B2C60_RS09245GCF_900164195#B2C60_RS09245
RROmpR
287 418-288 089 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS03730Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2848219
Simplified PFAM architecture for HKOC_2848219
PFAM domain coverage: 110 / 335 aa (32.8%)
1 aa335 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-330]
- Domain count: 1
- Matched identifier: HKOC_2848219
- Positioned domains: HATPase_c 221-330
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS03730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900164195
Assembly16780_8#63 · Scaffoldhaploid
Genome composition4 282 513 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 53 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key