1 HisKA#1
148-211 aa · 64 aa · 17.3% of protein
Raw token
HisKA:148:0.0000000000000742:211:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2C73_RS15085
Histidine kinase, Classic
Clostridioides difficile · GCF_900164115
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_900164115#B2C73_RS15085Stable P2CS identifier used across views.
GenomeGCF_900164115Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 371 aa (46.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa371 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
260-368 aa · 109 aa · 29.4% of protein
Raw token
HATPase_c:260:3.91e-25:368:110:109- Raw architecture: HisKA:148:0.0000000000000742:211:64:64#HATPase_c:260:3.91e-25:368:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_900164115::NZ_FUME01000005.1::G00030
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span160401-166125Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375098_03001RefSeq proteinWP_021397421.1
Context group ID
GCF_900164115::NZ_FUME01000005.1::G00030Context members
B2C73_RS15085B2C73_RS15090B2C73_RS15095B2C73_RS15100B2C73_RS15105
Partner locus tags
B2C73_RS15085B2C73_RS15090B2C73_RS15095B2C73_RS15100B2C73_RS15105
Partner old locus tags
SAMEA3375098_03001SAMEA3375098_03002SAMEA3375098_03003SAMEA3375098_03004SAMEA3375098_03005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021397421.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2C73_RS15085Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375098_03001Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUME01000005.1Sequence record reported by the local genomic context database.
Genomic interval160 401-161 516 nt1 116 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span160 401-166 125 ntGCF_900164115::NZ_FUME01000005.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900164115::NZ_FUME01000005.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUME01000005.1All displayed genes belong to this local TCS context.
Neighborhood span160 401-166 125 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 401 nt166 125 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
B2C73_RS15085GCF_900164115#B2C73_RS15085
HKClassicCurrent focus
160 401-161 516 nt · Reverse (-)
B2C73_RS15090GCF_900164115#B2C73_RS15090
RROmpR
161 552-162 250 nt · Reverse (-)
B2C73_RS15095GCF_900164115#B2C73_RS15095
RROmpR
162 631-163 311 nt · Reverse (-)
B2C73_RS15100GCF_900164115#B2C73_RS15100
HKClassic
163 361-165 376 nt · Reverse (-)
B2C73_RS15105GCF_900164115#B2C73_RS15105
RROmpR
165 448-166 125 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450145#QK3_RS16740Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2676374
Simplified PFAM architecture for HKOC_2676374
PFAM domain coverage: 174 / 371 aa (46.9%)
1 aa371 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[149-213] | HATPase_c[261-369]
- Domain count: 2
- Matched identifier: HKOC_2676374
- Positioned domains: HisKA 149-213 ; HATPase_c 261-369
Cluster members and taxonomy
Representative gene: GCF_000450145#QK3_RS16740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900164115
Assembly16780_8#32 · Contighaploid
Genome composition4 282 662 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 112 · HK 55 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key