1 HisKA#1
65-122 aa · 58 aa · 21.3% of protein
Raw token
HisKA:65:0.00000000244:122:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2C73_RS08245
Histidine kinase, Classic
Clostridioides difficile · GCF_900164115
ClassHKTypeClassicLength272 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900164115#B2C73_RS08245Stable P2CS identifier used across views.
GenomeGCF_900164115Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 272 aa (52.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa272 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
172-257 aa · 86 aa · 31.6% of protein
Raw token
HATPase_c:172:0.00000000000000195:257:91:109- Raw architecture: HisKA:65:0.00000000244:122:58:64#HATPase_c:172:0.00000000000000195:257:91:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900164115::NZ_FUME01000002.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span375657-376475Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3375098_01662RefSeq proteinWP_226811947.1
Context group ID
GCF_900164115::NZ_FUME01000002.1::G00022Context members
B2C73_RS08245
Partner locus tags
B2C73_RS08245
Partner old locus tags
SAMEA3375098_01662
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226811947.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2C73_RS08245Primary locus identifier stored in the genes table.
Old locus tagSAMEA3375098_01662Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FUME01000002.1Sequence record reported by the local genomic context database.
Genomic interval375 657-376 475 nt819 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span375 657-376 475 ntGCF_900164115::NZ_FUME01000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900164115::NZ_FUME01000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FUME01000002.1All displayed genes belong to this local TCS context.
Neighborhood span375 657-376 475 nt819 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
375 657 nt376 475 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B2C73_RS08245GCF_900164115#B2C73_RS08245
HKClassicCurrent focus
375 657-376 475 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004314545#E0O41_RS01100Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2892347
Simplified PFAM architecture for HKOC_2892347
PFAM domain coverage: 145 / 295 aa (49.2%)
1 aa295 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-145] | HATPase_c[195-279]
- Domain count: 2
- Matched identifier: HKOC_2892347
- Positioned domains: HisKA 86-145 ; HATPase_c 195-279
Cluster members and taxonomy
Representative gene: GCF_004314545#E0O41_RS01100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900164115
Assembly16780_8#32 · Contighaploid
Genome composition4 282 662 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 112 · HK 55 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key