1 Response_reg#1
9-118 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:9:4.42e-17:118:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1K94_RS09190
Response regulator NarL family
Bifidobacterium longum · GCF_900157085
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900157085#B1K94_RS09190Stable P2CS identifier used across views.
GenomeGCF_900157085Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 223 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-214 aa · 56 aa · 25.1% of protein
Raw token
HTH_LUXR:159:0.00000000000000111:214:56:58- Raw architecture: Response_reg:9:4.42e-17:118:114:111#HTH_LUXR:159:0.00000000000000111:214:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900157085::NZ_FTRG01000008.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span51207-51878Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900157085::NZ_FTRG01000008.1::G00018Context members
B1K94_RS09190
Partner locus tags
B1K94_RS09190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_179106095.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1K94_RS09190Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FTRG01000008.1Sequence record reported by the local genomic context database.
Genomic interval51 207-51 878 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 207-51 878 ntGCF_900157085::NZ_FTRG01000008.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900157085::NZ_FTRG01000008.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FTRG01000008.1All displayed genes belong to this local TCS context.
Neighborhood span51 207-51 878 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 207 nt51 878 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B1K94_RS09190GCF_900157085#B1K94_RS09190
RRNarLCurrent focus
51 207-51 878 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900157085#B1K94_RS09190The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1634680
Simplified PFAM architecture for RROC_1634680
PFAM domain coverage: 158 / 223 aa (70.9%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-112] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1634680
- Positioned domains: Response_reg 9-112 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_900157085#B1K94_RS09190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_900157085
AssemblyBifido_04_v1 · Contighaploid
Genome composition2 579 388 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 30 · HK 11 · RR 18CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key