1 Response_reg#1
11-124 aa · 114 aa · 51.6% of protein
Raw token
Response_reg:11:0.0000000000000303:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1K94_RS00360
Response regulator NarL family
Bifidobacterium longum · GCF_900157085
ClassRRTypeNarLLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900157085#B1K94_RS00360Stable P2CS identifier used across views.
GenomeGCF_900157085Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 221 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-214 aa · 57 aa · 25.8% of protein
Raw token
HTH_LUXR:158:0.0000000000000339:214:57:58- Raw architecture: Response_reg:11:0.0000000000000303:124:114:111#HTH_LUXR:158:0.0000000000000339:214:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900157085::NZ_FTRG01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span70996-71661Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900157085::NZ_FTRG01000001.1::G00004Context members
B1K94_RS00360
Partner locus tags
B1K94_RS00360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077423953.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1K94_RS00360Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FTRG01000001.1Sequence record reported by the local genomic context database.
Genomic interval70 996-71 661 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 996-71 661 ntGCF_900157085::NZ_FTRG01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900157085::NZ_FTRG01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FTRG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span70 996-71 661 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 996 nt71 661 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B1K94_RS00360GCF_900157085#B1K94_RS00360
RRNarLCurrent focus
70 996-71 661 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900157085#B1K94_RS00360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1720771
Simplified PFAM architecture for RROC_1720771
PFAM domain coverage: 166 / 221 aa (75.1%)
1 aa221 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[161-213]
- Domain count: 2
- Matched identifier: RROC_1720771
- Positioned domains: Response_reg 11-123 ; GerE 161-213
Cluster members and taxonomy
Representative gene: GCF_900157085#B1K94_RS00360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_900157085
AssemblyBifido_04_v1 · Contighaploid
Genome composition2 579 388 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 30 · HK 11 · RR 18CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key