1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:1.96e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMZ96_RS00345
Response regulator OmpR family
Bacillus mycoides · GCF_900115885
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900115885#BMZ96_RS00345Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:3.93e-34:229:77:77- Raw architecture: Response_reg:6:1.96e-35:115:111:111#Trans_reg_C:153:3.93e-34:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900115885::NZ_FOYB01000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55652-57845Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04487920_10167RefSeq proteinWP_000033680.1
Context group ID
GCF_900115885::NZ_FOYB01000001.1::G00016Context members
BMZ96_RS00345BMZ96_RS00350
Partner locus tags
BMZ96_RS00345BMZ96_RS00350
Partner old locus tags
SAMN04487920_10167SAMN04487920_10168
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000033680.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B9VUH0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B9VUH0_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMZ96_RS00345Primary locus identifier stored in the genes table.
Old locus tagSAMN04487920_10167Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FOYB01000001.1Sequence record reported by the local genomic context database.
Genomic interval55 652-56 353 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 652-57 845 ntGCF_900115885::NZ_FOYB01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900115885::NZ_FOYB01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FOYB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span55 652-57 845 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 652 nt57 845 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMZ96_RS00345GCF_900115885#BMZ96_RS00345
RROmpRCurrent focus
55 652-56 353 nt · Forward (+)
BMZ96_RS00350GCF_900115885#BMZ96_RS00350
HKClassic
56 337-57 845 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS21655Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080339
Simplified PFAM architecture for RROC_1080339
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1080339
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS21655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_900115885
AssemblyIMG-taxon 2615840538 annotated assembly · Scaffoldhaploid
Genome composition5 834 130 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 69 · RR 59CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key