1 HisKA#1
221-285 aa · 65 aa · 14.8% of protein
Raw token
HisKA:221:1.97e-16:285:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLW26_RS12995
Histidine kinase, Classic
Bacillus nitratireducens · GCF_900107515
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900107515#BLW26_RS12995Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 439 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-428 aa · 99 aa · 22.6% of protein
Raw token
HATPase_c:330:1.22e-23:428:102:109- Raw architecture: HisKA:221:1.97e-16:285:65:64#HATPase_c:330:1.22e-23:428:102:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900107515::NZ_FNRB01000003.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span373116-374435Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04488146_103375RefSeq proteinWP_139265921.1
Context group ID
GCF_900107515::NZ_FNRB01000003.1::G00012Context members
BLW26_RS12995
Partner locus tags
BLW26_RS12995
Partner old locus tags
SAMN04488146_103375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_139265921.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLW26_RS12995Primary locus identifier stored in the genes table.
Old locus tagSAMN04488146_103375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FNRB01000003.1Sequence record reported by the local genomic context database.
Genomic interval373 116-374 435 nt1 320 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span373 116-374 435 ntGCF_900107515::NZ_FNRB01000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900107515::NZ_FNRB01000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNRB01000003.1All displayed genes belong to this local TCS context.
Neighborhood span373 116-374 435 nt1 320 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
373 116 nt374 435 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BLW26_RS12995GCF_900107515#BLW26_RS12995
HKClassicCurrent focus
373 116-374 435 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007682355#FS874_RS14810Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2085404
Simplified PFAM architecture for HKOC_2085404
PFAM domain coverage: 322 / 439 aa (73.3%)
1 aa439 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[39-194] | HisKA[221-283] | HATPase_c[327-429]
- Domain count: 3
- Matched identifier: HKOC_2085404
- Positioned domains: 5TM-5TMR_LYT 39-194 ; HisKA 221-283 ; HATPase_c 327-429
Cluster members and taxonomy
Representative gene: GCF_007682355#FS874_RS14810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_900107515
AssemblyIMG-taxon 2639762568 annotated assembly · Scaffoldhaploid
Genome composition5 810 072 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key