1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:7.46e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLW26_RS12370
Response regulator OmpR family
Bacillus nitratireducens · GCF_900107515
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900107515#BLW26_RS12370Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:153:4.05e-31:229:77:77- Raw architecture: Response_reg:5:7.46e-37:114:111:111#Trans_reg_C:153:4.05e-31:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900107515::NZ_FNRB01000003.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247847-249692Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04488146_103251RefSeq proteinWP_000981333.1
Context group ID
GCF_900107515::NZ_FNRB01000003.1::G00009Context members
BLW26_RS12365BLW26_RS12370
Partner locus tags
BLW26_RS12365BLW26_RS12370
Partner old locus tags
SAMN04488146_103250SAMN04488146_103251
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000981333.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLW26_RS12370Primary locus identifier stored in the genes table.
Old locus tagSAMN04488146_103251Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FNRB01000003.1Sequence record reported by the local genomic context database.
Genomic interval248 994-249 692 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span247 847-249 692 ntGCF_900107515::NZ_FNRB01000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900107515::NZ_FNRB01000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNRB01000003.1All displayed genes belong to this local TCS context.
Neighborhood span247 847-249 692 nt1 846 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 847 nt249 692 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLW26_RS12365GCF_900107515#BLW26_RS12365
HKClassic
247 847-249 004 nt · Reverse (-)
BLW26_RS12370GCF_900107515#BLW26_RS12370
RROmpRCurrent focus
248 994-249 692 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550375#CON06_RS02195Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1127347
Simplified PFAM architecture for RROC_1127347
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_1127347
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_002550375#CON06_RS02195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_900107515
AssemblyIMG-taxon 2639762568 annotated assembly · Scaffoldhaploid
Genome composition5 810 072 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key