1 HisKA#1
85-152 aa · 68 aa · 21.9% of protein
Raw token
HisKA:85:0.0000000000000152:152:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLW26_RS06795
Histidine kinase, Classic
Bacillus nitratireducens · GCF_900107515
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900107515#BLW26_RS06795Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 311 aa (56.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
198-306 aa · 109 aa · 35.0% of protein
Raw token
HATPase_c:198:6.38e-25:306:109:109- Raw architecture: HisKA:85:0.0000000000000152:152:68:64#HATPase_c:198:6.38e-25:306:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900107515::NZ_FNRB01000002.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7819-9448Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04488146_10211RefSeq proteinWP_000259974.1
Context group ID
GCF_900107515::NZ_FNRB01000002.1::G00042Context members
BLW26_RS06790BLW26_RS06795
Partner locus tags
BLW26_RS06790BLW26_RS06795
Partner old locus tags
SAMN04488146_10210SAMN04488146_10211
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000259974.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLW26_RS06795Primary locus identifier stored in the genes table.
Old locus tagSAMN04488146_10211Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FNRB01000002.1Sequence record reported by the local genomic context database.
Genomic interval8 513-9 448 nt936 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 819-9 448 ntGCF_900107515::NZ_FNRB01000002.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900107515::NZ_FNRB01000002.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNRB01000002.1All displayed genes belong to this local TCS context.
Neighborhood span7 819-9 448 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 819 nt9 448 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLW26_RS06790GCF_900107515#BLW26_RS06790
RROmpR
7 819-8 511 nt · Forward (+)
BLW26_RS06795GCF_900107515#BLW26_RS06795
HKClassicCurrent focus
8 513-9 448 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007681365#FS775_RS04225Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2877200
Simplified PFAM architecture for HKOC_2877200
PFAM domain coverage: 173 / 311 aa (55.6%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-152] | HATPase_c[201-306]
- Domain count: 2
- Matched identifier: HKOC_2877200
- Positioned domains: HisKA 86-152 ; HATPase_c 201-306
Cluster members and taxonomy
Representative gene: GCF_007681365#FS775_RS04225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_900107515
AssemblyIMG-taxon 2639762568 annotated assembly · Scaffoldhaploid
Genome composition5 810 072 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key