1 Hpt#1
4-96 aa · 93 aa · 14.1% of protein
Raw token
Hpt:4:6.24e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLW26_RS03605
Histidine kinase, CheA
Bacillus nitratireducens · GCF_900107515
ClassHKTypeCheALength660 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900107515#BLW26_RS03605Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length660 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 660 aa (64.5%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa660 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
277-336 aa · 60 aa · 9.1% of protein
Raw token
H-kinase_dim:277:0.00000000311:336:67:673 HATPase_c#3
384-523 aa · 140 aa · 21.2% of protein
Raw token
HATPase_c:384:1.55e-17:523:140:1094 CheW#4
528-660 aa · 133 aa · 20.2% of protein
Raw token
CheW:528:1.03e-20:660:139:138- Raw architecture: Hpt:4:6.24e-17:96:93:84#H-kinase_dim:277:0.00000000311:336:67:67#HATPase_c:384:1.55e-17:523:140:109#CheW:528:1.03e-20:660:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900107515::NZ_FNRB01000001.1::G00062
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span643081-645561Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04488146_101717RefSeq proteinWP_090813095.1
Context group ID
GCF_900107515::NZ_FNRB01000001.1::G00062Context members
BLW26_RS03600BLW26_RS03605
Partner locus tags
BLW26_RS03600BLW26_RS03605
Partner old locus tags
SAMN04488146_101716SAMN04488146_101717
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_090813095.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLW26_RS03605Primary locus identifier stored in the genes table.
Old locus tagSAMN04488146_101717Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FNRB01000001.1Sequence record reported by the local genomic context database.
Genomic interval643 579-645 561 nt1 983 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span643 081-645 561 ntGCF_900107515::NZ_FNRB01000001.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900107515::NZ_FNRB01000001.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNRB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span643 081-645 561 nt2 481 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
643 081 nt645 561 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLW26_RS03600GCF_900107515#BLW26_RS03600
RRCheY
643 081-643 449 nt · Forward (+)
BLW26_RS03605GCF_900107515#BLW26_RS03605
HKCheACurrent focus
643 579-645 561 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007681365#FS775_RS13145Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0872678
Simplified PFAM architecture for HKOC_0872678
PFAM domain coverage: 508 / 660 aa (77.0%)
1 aa660 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[141-218] | H-kinase_dim[277-335] | HATPase_c[384-523] | CheW[530-660]
- Domain count: 5
- Matched identifier: HKOC_0872678
- Positioned domains: Hpt 4-103 ; P2 141-218 ; H-kinase_dim 277-335 ; HATPase_c 384-523 ; CheW 530-660
Cluster members and taxonomy
Representative gene: GCF_007681365#FS775_RS13145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_900107515
AssemblyIMG-taxon 2639762568 annotated assembly · Scaffoldhaploid
Genome composition5 810 072 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key